Is there any way to disable automatic alignment across a range of components or all masters rather than having to do it to each one individually?
Like holding down the option ket when selecting?
That would be really handy.
Doing this for all masters has been requested and I for one am looking forward to it a lot. In the meantime, you can find two scripts that might be of interest to you in the Plugin Manager: Automatically Align in All Masters and Toggle Automatic Alignment in All Masters, both part of the eweracs scripts.
I discovered the Alignment Manager, which worked for disabling automatic alignment.
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I was about to recommend the Alignment Manager but you found it already.