Font level transformations should ignore glyph level node selections

This seems like it must be a bug. I would expect node selection to be ignored when applying transformations from font view.

selected nodes

Yes. I’ll file a bug report.

I could reproduce this for slanting and aligning. Did I miss something?

As a workaround until this is fixed, you can quickly reset layer selections with this snippet:

for layer in Glyphs.font.selectedLayers:
	layer.selection = None