Same font, different styles shows different baseline in Indesign

I am designing an All caps font in 2 different styles with the same metrics. When I export to try the font in indesign each style shows in a different baseline. Not sure why this is happening.

Is this the same issue? Line Height Misaligment in Adobe Apps

Yes, it depends on the setting in Illustrator. See the Illustrator chapter in the Vertical Metrics tutorial.