After turning instance into master using “Instance as Master” option, all the components of created master will have Automatic Alignment turned off, regardless of its state in a masters involved in interpolation. Here’s the script to (re)sync Automatic Alignment for components between selected master and specified master.
Usage
Select the master where Automatic Alignment of components need to be synced with reference master.
Default reference master is “Regular”. If you need to change it, specify the name of the reference master in a script.
Run a script.
Steps the script takes
Goes through all the glyphs and checks if they have components.
Compares the Automatic Alignment status of each component between the selected master and the reference master. If it’s different, it will be synced.
if it is not fixed yet, you can also do this:
choose a Master with correct alignment, select all glyphs and run the mekkablue script »sync components across masters«
The only thing you need is to know what the master has correctly automatically aligned components. Let’s say, it is Regular, so it is your reference. Then:
Using mekkablue script – you need to select the reference (Regular) master. Run the script. As result, the automatical alignment of components in all the other masters will be synced to components in reference (Regular) master.
Using my script from the first message – you need to select one master where you not sure that components are aligned correctly. And if your reference is not Regular, then specify the reference master name in the line 7 of the script. Run the script. As result, the automatical alignment of components in only the selected master will be synced to the reference master (Regular or whatever you specify in the line 7).
The difference is that my script operates with one master at a time.