Glyphs 3 version 3.0.5 (3131), but tested in 3.0.4 (3108) too.
Exporting a variable font with 3 masters and 2 axes (tried different combinations of weight, width, optical size, italic etc) results in one axis getting weirdly collapsed/erased and the other axis getting scaled up. (Even though the letterforms are drawn at the same scale, on one end of the axis it’ll be normal scale that I drew it at and the other end it’s like 3x bigger.)
Tried on a bunch of different files and with different settings and couldn’t find a solution so I think it’s a bug on the export. Only solve that worked was to copy and paste to Glyphs 2 and export from there where it worked perfectly.